Al-Mamun, H. A., Clark, S. A., Kwan, P. & Gondro, C. (2015). Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep. Genetic Selection and Evolution, 47, 90.
Barbato, M., Wengel, P. O., Tapio, M. & Bruford, M. W. (2015). SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. Frontier in Genetics, 6, 109.
Browning, B. L. & Browning, S. R. (2009). A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. American Journal of Human Genetics, 84, 210-223.
Burren, A., Signer-Hasler, H., Neuditschko, M., Tetens, J., Kijas, J. W., Drögemüller, C. & et al. (2014). Fine-scale population structure analysis of seven local Swiss sheep breeds using genome-wide SNP data. Animal Genetic Resources, 55, 67-76.
Corbin, L. J., Liu, A. Y. H., Bishop, S. C. & Woolliams, J. A. (2012). Estimation of historical effective population size using linkage disequilibria with marker data. Journal of Animal Breeding Genetics, 129, 257-270.
Danchin-Burge, C.,
Palhière, I.,
François, D.,
Bibé, B.,
Leroy, G. &
Verrier, E. (2010). Pedigree analysis of seven small French sheep populations and implications for the management of rare breeds.
Journal of Animal Science, 88, 505-516.
Esmaeilkhanian, E. & Banabazi, M. H. (2006). Genetic variation within and between five Iranian sheep populations using microsatellite markers. Pakistan Journal of Biological Science, 9(3), 2488-2492.
Flury, C., Tapio, M., Sonstegard, T., Drögemüller, C., Leeb, T., Simianer, H. & et al., (2010). Effective population size of an indigenous Swiss cattle breed estimated from linkage disequilibrium. Journal of Animal Breeding Genetics, 127, 339-347.
Frankham, R. (2005). Genetics and extinction. Biological Conservation, 126, 131-140.
Frankham, R., Bradshaw, C. J. A. & Brook, B. W. (2014). Genetics in conservation and management: Revised recommendations for the 50/500 rules, Red List criteria and population viability analyses. Biological Conservation, 170, 56-63.
Ghafouri-Kesbi, F. (2012). Using pedigree information to study genetic diversity and reevaluating a selection program in an experimental flock of Afshari sheep.
Archiv fur Tierzucht, 55: 375-384.
Hayes, B. J., Visscher, P. M., McPartlan, H. C. & Goddard, M. E. (2003). Novel multilocus measure of linkage disequilibrium to estimate past effective population size. Genome Research, 13, 635–643.
Hill, W. G. & Robertson, A. (1968). Linkage Disequilibrium in Finite Populations. Theoretical Applied Genetics, 38, 226-231.
Hill, W. G. (1981). Estimation of effective population size from data on linkage disequilibrium. Genetic Resources, 38, 209-216.
Karimi, K., Esmaeelizadeh, A. K. & Asadi Fozi, M. (2015). Estimation of effective population size in Sarabi cattle based on single nucleotide polymorphism markers. Iranian Journal of Animal Science, 46(3), 335-343. (in Farsi)
Kijas, J. W., Lenstra, J. A., Hayes, B. J., Boitard, S., Porto Neto, L. R., San Cristobal, M. & et al. (2012). Genome-wide analysis of the world’s sheep breeds reveals high levels of historic mixture and strong recent selection. PLoS Bio, 10, e1001258.
Kijas, J. W., Townley, D., Dalrymple, B. P., Heaton, M. P., Maddox, J. F. & et al. (2009). A genome wide survey of SNP variation reveals the genetic structure of sheep breeds. PLoS ONE, 4, e4668.
Lee, S. H., Cho, Y. M., Lim, D., Kim, H. C., Choi, B. H. & et al. (2011). Linkage disequilibrium and effective population size in Hanwoo Korean cattle. Asian Australas Journal of Animal Science, 24, 1660-1665.
Leroy, G., Mary-Huard, T., Verrier, E., Danvy, S., Charvolin, E. & Danchin-Burge, C. (2013). Methods to estimate effective population size using pedigree data: examples in dog, sheep, cattle and horse. Genetic Selection and Evolution, 45, 1-10.
Marquez, G. C., Speidel, S. E., Enns, R. M. & Garrick, D. J. (2010). Genetic diversity and population structure of American Red Angus cattle. Journal of Animal Science, 88, 59-68.
Mohammadi, A. R., Abbasi, M. A., Moghaddam, A. A. & Zare Shahneh A. (2009). Estimation of growth traits in Iranian Afshari sheep breed under rural production system. Journal of Animal and Veterinary advances, 8(7), 1449-54.
Mokhtari, M. S., Miraei-Ashtiani, S. R., Jafaroghli, M. & Gutiérrez, J. P. (2015). Studying genetic diversity in Moghani sheep using pedigree analysis. Journal of Agricultural Science and Technology, 17, 1151-1160.
Moradi, M. H., Nejati-Javaremi, A., Moradi-Shahrbabak, M., Dodds K. G. & McEwan. J. C. (2012). Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition. BMC Genetics, 13, 10.
Moradi, M. H., Rostamzadeh, J., Rashidi, A., Vahabi, K. & Farahmand, H. (2013). Analysis of genetic diversity in Iranian Mohair goat and its color types using Inter Simple Sequence Repeat (ISSR) markers. Journal of Agricultural Communications, 1, 2.
Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
Ohta, T. & Kimura, M. (1971). Linkage disequilibrium between two segregating nucleotide sites under the steady flux of mutations in a finite population. Genetics, 68, 571-580.
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D. & et al. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics, 81, 559-575.
Qanbari, S.,
Pimentel, E. C.,
Tetens, J.,
Thaller, G.,
Lichtner, P.,
Sharifi, A. R. &
Simianer, H. (2010). The pattern of linkage disequilibrium in German Holstein cattle.
Animal Genetics, 41, 346-356.
Saatchi, M., McClure, M. C., McKay, S. D., Rolf, M. M., Kim, J. & et al. (2011). Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation. Genetic Selection and Evolution, 43, 40.
Sved, J. A. (1971). Linkage disequilibrium and homozygosity of chromo-some segments in finite populations. Theoretical Population Biology, 141, 125-141.
Tahmoorespur, M. & Sheikhloo, M. (2011). Pedigree analysis of the closed nucleus of Iranian Baluchi sheep. Small Ruminant Research, 99, 1-6.
Tenesa, A.,
Navarro, P.,
Hayes, B. J.,
Duffy, D. L.,
Clarke, G. M.,
Goddard, M. E. &
Visscher P. M. (2007). Recent human effective population size estimated from linkage disequilibrium.
Genome Research, 17, 520-526.
Teo, Y. Y., Fry, A. E., Clark, T. G., Tai, E. S. & Seielstad, M. (2007). On the usage of HWE for identifying genotyping errors. Annals of Human Genetics, 71, 701-703.
Uimari, P. & Tapio, M. (2011). Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds. Journal of Animal Science, 89, 609-614.
Villa-Angulo, R., Matukumalli, L. M., Gill, C. A., Choi, G., Van Tassle, C. P. & Grefenstette, J. J. (2009). High-resolution haplotype block structure in the cattle genome. BMC Genetics, 10, 19.
Weir, B. S. & Hill, W. G. (1980). Effect of mating structure on variation in linkage disequilibrium. Genetics, 95, 477-488.
Zeder, M. A. (1999). Animal domestication in the Zagros: a review of past and current research. Pale´orient, 25, 11-26.
Zhao, F., Wang, G., Zeng, T., Wei, C., Zhang, L.&
et al. (2014). Estimations of genomic linkage disequilibrium and effective population sizes in three sheep population
s. Livestock Science, 170, 22-2.
)