Volume 53 (2022)
Volume 52 (2021)
Volume 51 (2020)
Volume 50 (2019)
Volume 49 (2018)
Volume 48 (2017)
Volume 47 (2016)
Volume 46 (2015)
Volume 45 (2014)
Volume 44 (2013)
Volume 43 (2012)
Volume 42 (2011)
Volume 41 (2010)
Volume 40 (2009)
Volume 39 (2009)
Genomic scan for selection signatures in native (Sarabi, Najdi and Taleshi) and ‎Holstein cattle breeds using hapFLK method

Mahdi Farzi; Mohammad Moradi Shahrbabak; Hossein Moradi Shahrbabak; Mohammad Bagher Zandi baghcheh maryam

Volume 53, Issue 3 , December 2022, , Pages 203-209


  In order to identify the signatures of selection in three Iranian native cattle and Holstein breeds, genomic information of 153 native cattle (including 63 Sarabi, 44 Najdi and 46 Taleshi) and 60 Holstein cattle and 46 Brahma cattle (as an outgroup breed) were used. In order to determine the genotype ...  Read More

Identification of selective signatures associated with resistance to bovine leukosis ‎‎(BLV) in Iranian Holstein cows

Mahdi JavanNikkhah; Hossein Moradi Shahrbabak; Mohammad Hossein Moradi; Ali Sadeghi-Sefidmazgi

Volume 52, Issue 1 , June 2021, , Pages 23-35


  Bovine viral leukemia (BLV) is one of the deadliest viral diseases that is associated with many economic losses in the dairy industry, such as reduced production capacity and reproductive performance of infected animals and their eventual culling. The aim of this study was to identify the selection signatures ...  Read More

Estimation of effective population size of Iranian water buffalo by genomic data

Mahdi Mokhber; Mohammad Moradi Shahre Babak; Mostafa Sadeghi; Hossein Moradi Shahrbabak; Javad Rahmani-Nia

Volume 50, Issue 3 , December 2019, , Pages 197-205


  In order to estimate the effective population size (Ne) in Iranian water buffalo blood and hair samples of 407 individual from Azari (N=260), Khuzestani (N=120) and Mazandrani (N=27) buffalo populations were gathered. After DNA extaraction, the samples were genotyped using Axiom® Buffalo Genotyping ...  Read More

Detection of selection signatures in Azeri and Mazandrani buffalo populations by high density SNP markers

Mahdi Mokhber; Mohammad Moradi Shahre Babak; Mostafa Sadeghi; Hossein Moradi Shahrbabak; Javad Rahmani-Nia

Volume 50, Issue 2 , September 2019, , Pages 89-102


  In order to detect signature of selection on buffalo genome, a set of 287 water buffalo samples from 260 Azari and 27 Mazandarani buffalo breeds were genotyped using the Axiom® Buffalo Genotyping 90K Array. The unbiased fixation index method (FST) was used to detect signatures of selection. In total, ...  Read More

Study of differential gene expression in queen, drone and worker honey bee using RNA-seq data

Mohamadreza Attari; Hossein Moradi Shahrbabak; Gholamali Nehzati Paghale; Mohamad Hossein Banabazi; Mohamadreza Hashemi

Volume 50, Issue 2 , September 2019, , Pages 103-113


  The aim of this study was to investigate the gene expression profile and find the important genes in the differentiation and evolution of the queen, worker and drone honey bee at Stage 5 Larvae. Therefore, transcripts (total mRNA sequence) of 15 samples of Italian honey bee (A. m. ligustica) including ...  Read More

Study of the correlation among milk production traits, its components and the breeding value of these traits with predicted methane using volatile fatty acids in Iranian Holstein cattle

Ali Jalil Sarghale; Mohammad Moradi Shahre Babak; Hossein Moradi Shahrbabak; Ardeshir Nejati Javaremi; Mahdi Saatchi

Volume 50, Issue 1 , August 2019, , Pages 1-10


  The methane production from ruminant production system was estimated to reach 250-500 L per animal per day which has been reported to contribute up to 8-10 % of global warming during the next 50-100 years. The aim of this study was to investigate the correlation among methane emission (predicted by volatile ...  Read More

Invistigation of effictive populatioin, linkage disequilibrium and haplotype block structure in Azarbaijani breed buffalo using high density SNP markers

Mohammad Hossein Fallahi; Hossein Moradi Shahrbabak; Mohammad Moradi Shahrbabak; Rostam Abdollahi Arpanahi

Volume 49, Issue 2 , September 2018, , Pages 247-255


  The aim of this study was to determine genomewide linkage disequilibrium (LD), Haplotype block and effective population size using the information obtained from 243 Azarbaijani breed buffalo using a high density SNP panel (Axiom® Buffalo Genotyping 90K). After quality control of SNP markers data, ...  Read More

Sex determination in the canary based on the CHD gene located at the sex chromosome using feather

Hamidreza Abdollahi; Hassan Mehrabani Yeganheh; Hossein Moradi Shahrbabak

Volume 49, Issue 2 , September 2018, , Pages 257-265


  The aim of this research was to utilize a simple, rapid, cheap and safe method for sex determination of newly born canaries through feather to help accurately breeding this bird. The external morphology of males and females of many birds such as canary are fairly similar to each other, Therefore, determining ...  Read More

Genome-wide analysis for detection of loci under positive selection in Zandi sheep breed

Hossein Mohammadi; Seyed Abbas Rafat; Hossein Moradi Shahrbabak; Jalil Shoja; mohammad hosein moradi

Volume 48, Issue 4 , March 2018, , Pages 533-548


  Identification of selection targeted genomic regions is one of the main aims of biological research.The objective of this study was a genome-wide scan to identify the genomic regions that have been under artificial and natural selection in Zandi sheep breed. For this purpose, 96 animal of Zandi breed ...  Read More

Comparison of PCA and DAPC methods for analysis of Iranian Buffalo population structure using SNPchip90k data

Zahra Azizi; Hossein Moradi Shahrbabak; Mohammad Moradi Shahrbabak

Volume 48, Issue 2 , September 2017, , Pages 153-161


  Understanding of population genetic structure is valuable for better implementation of breeding programs and most importantly, preservation of genetic resources. Genomic data provide an opportunity to consider complex evolutionary history of populations and reconstruct rare historical events. In this ...  Read More

Genetic classification of Azari and North ecotype Buffalo population using SVM method

Zahra Azizi; Hossein Moradi Shahrbabak; Mohammad Moradi Shahrbabak; Abbas Rafat; Jalil Shodja

Volume 47, Issue 2 , October 2016, , Pages 279-290


  The purpose of this research was to classify buffaloes from different areas of the two Azari (West and East Azarbayjan and Ardabil provinces) and North (Guilan province) ecotypes using support vector machine method. A total of 258 buffalo were sampled and genotyped using the Axiom Buffalo 90K Genotyping ...  Read More

Identification of novel SNP in promoter of Insulin-Like Growth Factor-I (IGF1) gene in Japanese quail by PCR-SSCP assay

Homa Aarabi; Mohammad Moradi Shahrbabak; Abbas Pakdel; Hossein Moradi Shahrbabak; Ali Esmailizadeh koshkoiyeh

Volume 47, Issue 2 , October 2016, , Pages 303-312


  Insulin-like growth factor-1 gene (IGF1) is a biological candidate gene for investigation traits such as growth, body weight and muscles growth in different species. In this research eight pairs of white and wild quails were crossed reciprocally as a base population. A total of 34 quails were produced ...  Read More

Study the polymorphism of Exon 4 of GH gene and exon 10 of GHR gene and their association with carcass traits in Lori-Bakhtiari breed sheep using PCR-SSCP

Hossein Moradi Shahrbabak; Rasoul Khodabakhshzadeh; Mostafa Sadeghi; Amir TaheriYeganeh

Volume 47, Issue 1 , July 2016, , Pages 51-61


  The growth hormone (GH) gene is a candidate for growth trait in farm animals and plays an important role in growth metabolism. Growth hormone can contribute in growth metabolism when it\'s receptor (GHR) are on cells target. The single nucleotide polymorphism was occurred in GH and GHR genes and that ...  Read More

Unsupervised clustering analysis of population and subpopulation structure using dense SNP markers

Javad Rahmaninia; Seyed Reza Miraei-Ashtiani; Hossein Moradi Shahrbabak

Volume 46, Issue 3 , October 2015, , Pages 277-287


  High through put sequencing of single nucleotide polymorphisms (SNP) has revolutionized the fine scale analysis of the population structure in different species. Various methods have been proposed and used for the study of population structure using whole-genome marker data that each has advantages and ...  Read More

Genome-Wide Survey of signature of positive selection in Khuzestani and Mazandrani buffalo breeds

Mahdi Mokhber; Mohammad Moradi Shahrbabak; Mostafa Sadeghi; Hossein Moradi Shahrbabak; John Williams

Volume 46, Issue 2 , August 2015, , Pages 119-131


  Identification of selection targeted genomic regions is one of the most challenging areas of research in animal genetics, particularly in livestock. We carried out a genome-wide scan for signatures of positive selection to identify genomic regions that had been under selection in Iranian Khuzestani and ...  Read More

Factors associated with mortality from birth to yearling age in Moghani lambs

Hamed Rezaei; Hosein Moradi Shahrbabak; Mohammad Moradi Shahrbabak; Mahdi Bayeriyar

Volume 45, Issue 1 , April 2014, , Pages 51-58


  The data used in this research were according to survival rate records of 9700 lambs from 735 rams and 8082 ewes, which collected at Moghani Flock Breeding Research Station during the year 1365 to 1390. The frequency distribution causes of culling and survival distribution function of lambs to yearling ...  Read More

Applications of Principal Component Analysis to Prediction of Fat-Tail and Carcass Weight Traits in Makooei Lambs

Mahdi Mokhber; Hosein Moradi Shahr Babak; Amirhosein Khelt Abadi Farahani

Volume 44, Issue 4 , January 2014, , Pages 347-354


  The objective followed in the present study was to survey the relationship between 18 body trait measurements (live weight, height at wither, paunch girth, neck diameter, body length, girth around the body, width of fat tail at above, below and midpoint of fat tail, fat tail length lowers right and left ...  Read More